FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469940123
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT29308750.6236698797476375No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA23711200.504557896623779No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTCACCAAGTGTAGATCTC10536410.22420749972864093Illumina Single End PCR Primer 1 (96% over 31bp)
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5057820.10762690292780129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)