FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459747756
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT30617860.665970841628208No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA21937820.4771707901495445No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGACCTGAAATCTCGTATG17116770.3723078530915113TruSeq Adapter, Index 9 (97% over 36bp)
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5180050.11267156679716345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)