FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491736449
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG26700690.5429878150033169TruSeq Adapter, Index 6 (97% over 35bp)
CTCCACGCAAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24986890.508135812401411No Hit
CTCCACGCAAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14665950.29824817806011367No Hit
CTCCACGCAAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5482150.11148553277164125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)