FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501446882
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGAGATCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT36248500.7228781612007311No Hit
CCCGAGAGATCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA25015600.4988683926047425No Hit
CCCGAGAGATCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10179240.20299737350844668No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAATGCAATCTCGTATG10033440.2000897873765222TruSeq Adapter, Index 6 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)