FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486548288
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG14870020.30562269700145367TruSeq Adapter, Index 7 (97% over 35bp)
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT10487210.21554304595559487No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6137030.1261340374914648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)