FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486548288
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC15841050.32558022277945003Illumina Single End PCR Primer 1 (96% over 33bp)
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT9665150.1986472923320614No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA6195800.1273419340445814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)