FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007896394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007896394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505360173
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG22425460.4437520247564107TruSeq Adapter, Index 7 (97% over 35bp)
GGTCCTTCGATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19457370.3850198539487994No Hit
GGTCCTTCGATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12022820.23790596573189No Hit
GGTCCTTCGATGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5739980.11358196206727988No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)