FastQCFastQC Report
Wed 31 May 2023
EGAF00007902258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007902258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66258900
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT5112050.7715265420947224No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2415290.364523105575251No Hit
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1984540.2995129710876576No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCACGCAATCTCGTAT1619750.24445772567911633TruSeq Adapter, Index 1 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)