FastQCFastQC Report
Tue 23 May 2023
EGAF00007902259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007902259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66258900
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3556970.5368290146682182No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2069450.3123278533148No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG1703800.2571428140219653Illumina Single End PCR Primer 1 (100% over 50bp)
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1537630.2320639189603208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)