FastQCFastQC Report
Wed 31 May 2023
EGAF00007902260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007902260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70889538
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATAAAACCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT6417070.9052210214714618No Hit
GGTATAAAACCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA3071660.4333023019560376No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT1842690.25993821542467943TruSeq Adapter, Index 9 (97% over 38bp)
GGTATAAAACCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1500430.21165746629636661No Hit
GGTATAAAACCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1084900.153040918393346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)