FastQCFastQC Report
Tue 23 May 2023
EGAF00007902262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007902262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56753248
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2874130.5064256410487731No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1555790.2741323280739809No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATCAAGTATCTCGTAT1254750.22108866791201096TruSeq Adapter, Index 9 (97% over 38bp)
CCTGCCCCTGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC754640.13296860119794376No Hit
CCTGCCCCTGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC609870.10745992898943864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)