FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503471848
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCTCGGCTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18351860.36450617989667616No Hit
GATCTCGGCTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10695890.2124426627325546No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG9441560.18752905524918248TruSeq Adapter, Index 27 (97% over 38bp)
GATCTCGGCTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5836210.11591929167805226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)