FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492854043
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTGTGGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17896440.36311845777026525No Hit
ATTTGTGGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10170540.20636008052388036No Hit
ATTTGTGGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7303830.14819458425341556No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG6842580.13883582973874478TruSeq Adapter, Index 7 (97% over 34bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)