FastQCFastQC Report
Fri 3 May 2024
EGAF00007903165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500920816
Total Bases75.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT27207120.5431421320690334No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG20114450.4015494936029969TruSeq Adapter, Index 8 (97% over 35bp)
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18570920.3707356413792954No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5241770.1046426866796448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)