FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497751076
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT26742090.5372583061980162No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG19041920.3825590926497565TruSeq Adapter, Index 8 (97% over 35bp)
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18220420.366054859115965No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5140540.10327531667656303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)