FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473849803
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT40395980.8525059996701106No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA29558430.623793231797545No Hit
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC8570380.18086701620935358No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG7535120.15901916498211566TruSeq Adapter, Index 19 (97% over 37bp)

[OK]Adapter Content

Adapter graph