FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477441901
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGATCTCATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22711740.47569641358310527No Hit
CTTGATCTCATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA12680890.2656006934757911No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTATG9773140.20469799528550386TruSeq Adapter, Index 6 (97% over 35bp)
CTTGATCTCATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7633550.15988437512525738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)