FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494509806
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCGCAAGCATCTCGTATG18362620.3713297446724444TruSeq Adapter, Index 16 (97% over 35bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15139890.3061595506561098No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8441270.17069974948080202No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6211970.1256187425330854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)