FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506696886
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCGCAAGCATCTCGTATG19061270.37618683924574187TruSeq Adapter, Index 16 (97% over 35bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16075480.3172602880373731No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9005260.177724794622085No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6373590.12578703710446723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)