FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459658587
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGATACAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17684290.3847266318990795No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC13349170.29041489439204143Illumina Single End PCR Primer 1 (96% over 31bp)
AAATGATACAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7520250.16360512373067013No Hit
AAATGATACAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5385630.11716587380972826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)