FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468060663
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTAACCCACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18270160.3903374379487216No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG13374570.2857443715580944TruSeq Adapter, Index 3 (97% over 35bp)
TACTAACCCACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11782920.251739163989519No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC9711320.20747994368413739No Hit
TACTAACCCACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5260930.11239846489727336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)