FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511820859
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG52151071.018932094754661TruSeq Adapter, Index 7 (97% over 35bp)
TACTAACCCACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18830050.36790313776562983No Hit
TACTAACCCACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11449550.22370229346201773No Hit
TACTAACCCACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6075160.1186969990216831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)