FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508962676
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG84370811.6577013203223572TruSeq Adapter, Index 7 (97% over 37bp)
CCTGGGAAACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24903670.48930248079723626No Hit
CCTGGGAAACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14467360.2842518849063895No Hit
CCTGGGAAACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC7500170.14736188631639466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)