FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482963216
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18579900.38470631684711987No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGCGGTTATCTCGTATG13371000.2768533825565714TruSeq Adapter, Index 23 (97% over 36bp)
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10108590.2093035176409791No Hit
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6528000.13516557335496954No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5828910.120690557932677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)