FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482963216
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15316240.31713057004324735No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTAGCGCTGTGTAGATCTC13581810.2812183112512651Illumina Single End PCR Primer 1 (96% over 31bp)
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10097370.20907120181177524No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC6885780.14257359094610633No Hit
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5877350.12169353286731469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)