FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448837228
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG46991241.0469550444688158TruSeq Adapter, Index 7 (97% over 37bp)
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24915600.5551143810201056No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15358200.342177498698927No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6263500.13954947605192858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)