FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448837228
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC34935950.7783656929634188Illumina Single End PCR Primer 1 (96% over 33bp)
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22485680.5009762692857554No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15760810.3511475656827646No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5841350.1301440619359676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)