FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451668527
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG43436780.9616959651474676TruSeq Adapter, Index 7 (97% over 37bp)
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT24830140.549742532757878No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15404940.341067377492964No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC6253730.13845839650456762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)