FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007903245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464599315
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAAAACCCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18665860.40176253811308354No Hit
CAGAAAACCCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10500140.22600420751804165No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG7051150.1517684114536415TruSeq Adapter, Index 8 (97% over 35bp)
CAGAAAACCCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4901020.10548917834715275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)