FastQCFastQC Report
Thu 2 May 2024
EGAF00007903248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007903248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515349607
Total Bases77.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGGCCGGTGTGTAGATCTC38967960.756146108790959Illumina Single End PCR Primer 1 (96% over 33bp)
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT15950510.3095085313609252No Hit
TAGAGCCCGCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9394610.1822958603711519No Hit
TAGAGCCCGCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC7801190.15137665565348923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)