FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62876308
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT1530220.24336988743041335No Hit
CTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATA1526740.2428164198190517No Hit
CGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATC1477210.23493904890217154No Hit
GAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATA1452790.23105523307761647No Hit
CTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTAC1450860.2307482812126946No Hit
CCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGA1445500.22989581385726401No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC1285780.20449355900476857No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC1211790.19272601056665095No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1089280.17324172405288174No Hit
CTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAG1029310.1637039503019166No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT1007820.16028612875934128No Hit
GGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTG992450.1578416468091606No Hit
CTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATG982760.1563005257878691No Hit
CTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGG901000.14329721776921125No Hit
CCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATT897700.14277237779292004No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT788920.12547174366535643No Hit
TCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCAT687220.10929712985056311No Hit
CCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCA676770.10763513659230756No Hit
CTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAA660000.10496799525824575No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTG655880.10431274049996701No Hit
TTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACT651660.10364158149998247No Hit
TCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATAC647540.10298632674170373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)