FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60798425
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCAC1324250.21780991859575308No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT1316920.21660429525929334No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC1164440.19152469821381063No Hit
CTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAA1015640.16705038000573205No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG977360.1607541642731699No Hit
CAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGG925860.15228355010841155No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTG801700.13186196846382123No Hit
CAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACT761080.12518087434008365No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT752720.1238058387203287No Hit
CTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATC675120.11104235019245975No Hit
CGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGC647070.106428743836703No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT632680.10406190620891906No Hit
CAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAG629730.10357669627132611No Hit
AATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTAC618530.10173454328792234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)