FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69452796
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3174080.4570125585728758No Hit
CTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGT2243470.32302083273940474No Hit
GGCAAAGGTGCCCTTGAGGTTGTCCAGGTGAGCCAGGCCATCACTAAAGG1132850.1631107839056616No Hit
CACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAGGGCA943320.1358217457508838No Hit
GTTTTTTATTAGGCAGAATCCAGATGCTCAAGGCCCTTCATAATATCCCC894540.12879827041088454No Hit
CTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAGGGCAGG873400.1257544764648496No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT867760.12494241412541549No Hit
CTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACAGTTTGACATAA819940.11805716216234116No Hit
AGGAAATTGAGCAGAAGGTACAGGAGTAATAGCAATTCCCTGTAGCTCTC730060.10511599849774227No Hit
CTTTCTTCATGGCTTTTTTTGTGGGCTGCCACGCCCATCTTTATCACCAG721190.10383887208802939No Hit
CTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGC720120.10368481061583179No Hit
GTCCAGGTGAGCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCAT719510.10359698117841072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)