FastQCFastQC Report
Sat 25 May 2024
EGAF00007906054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69452796
Total Bases10.4 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGA1759660.2533605702497564No Hit
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC1632460.23504597280719985No Hit
AGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGC1628710.23450603774108678No Hit
CTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAGAGGATCTGTGACC1530200.22032230351100623No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA1329590.19143793721421956No Hit
CTCAAACAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTCTGCCGTT1313340.18909821859439613No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC1200060.17278786011725142No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC956790.13776119250836208No Hit
CAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCAA939240.13523429639895276No Hit
TGGGCATCATGTTGACCGAGCTGGAGAAAGCCTTGAACTCTATCATCGAC916610.13197596825331553No Hit
CTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCA902950.13000916478582086No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT893540.1286542877265877No Hit
CAGACACCATGGTGCACCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCC889750.12810859335310273No Hit
GGCAAGTCCGTGGGCATCATGTTGACCGAGCTGGAGAAAGCCTTGAACTC835850.12034792666950371No Hit
TGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGA804170.11578655523098019No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC772970.11129429548091915No Hit
CTGGGACAGAGGACTGCTGTCTGCCCTCTCTGGTCACCCTGCCTAGCTAG713060.1026682928646962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)