FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47730969
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3422890.7171214144007845No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2077640.4352813369449927No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT1185990.24847389961850552No Hit
CAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCAC963470.20185427201362705No Hit
AAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACC952190.19949102646543798No Hit
CCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGC855980.1793343018030914No Hit
CTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCT820470.17189468749314518No Hit
CTCGATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTTC743620.15579402965818692No Hit
CCTCGATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTT731280.15320870607089498No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC720530.15095649954225734No Hit
CCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCT706870.14809462594400713No Hit
CTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAA663450.13899780664415173No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT658600.13798169486146405No Hit
GAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCG646630.13547388908027408No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG638010.13366793370568278No Hit
GGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGA583660.12228119651205907No Hit
CTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACT565770.11853310583323795No Hit
CTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATC565500.11847653878554194No Hit
CAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGG564320.11822931983635195No Hit
GGACATCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATT552480.11574875004108967No Hit
CTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCC551320.11550572124358087No Hit
TTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCG550040.11523755153598496No Hit
CAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACT547490.1147033071966337No Hit
TGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTA536940.11249300218480794No Hit
CAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAA533160.11170106351706373No Hit
AATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCC532840.11163402109016475No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT531270.11130509418319162No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTG508190.10646965914310268No Hit
CAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGA505720.10595217541047616No Hit
CTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTT498750.10449190754958275No Hit
CGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACT490480.10275927982941221No Hit
CGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACT481520.10088209187624077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)