FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62273410
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCGGTTCAGTCTAATCCTTTTTGTAGTCACTCATAGGCCAGACTTAGG3058830.49119359289944137No Hit
CCCTGTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCAT2752670.4420297523453429No Hit
CTGTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTT2381000.3823461731098393No Hit
GTTCAGTCTAATCCTTTTTGTAGTCACTCATAGGCCAGACTTAGGGCTAG1997530.32076772413779814No Hit
GCTTTATTGGCTTATAGACCTGGGCAGTCCAGGTGTAGATCTGGTTCCAG1936540.3109738169147956No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC1914760.3074763370112541No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1807140.2901944826853066No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT1699960.27298328451902665No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1289520.20707393412372951No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA1231410.19774250358218698No Hit
CTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTACGGG1159370.1861741632584437No Hit
CGGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGT1110690.17835702268432066No Hit
GTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAGGCTTGGA1047470.16820501719754868No Hit
GTCAAAAGAAAGCTCTTTATTGATTGACTCAGCAATGCAGGGCTGGCACC1002110.16092100946455318No Hit
CACCTCTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTT995970.15993503487282934No Hit
CCACCTCTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTT820610.13177534360170737No Hit
GTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTA782500.12565555668141506No Hit
CACCTCTTAAGCATTTATTAGATGCCTATTATATGCCATATCTCAGCTTC773370.12418944136831434No Hit
CCTGTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATT766500.1230862417844149No Hit
GGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTC740170.11885811295703898No Hit
CCGGTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTG712320.11438589921444803No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT653220.10489549231365361No Hit
CCACCTCTTAAGCATTTATTAGATGCCTATTATATGCCATATCTCAGCTT640190.10280310649440909No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG629030.10101100935375146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)