FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62273410
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCAC1825920.29321021604566055No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTG1084490.17414976954048283No Hit
GAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATAT1059750.17017696638099633No Hit
AATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTAC907410.14571387691793336No Hit
CACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAAC760110.12206012164742545No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT642140.10311624174748099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)