FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50163556
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTCT5137071.0240641632343608No Hit
GGGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACA2851630.5684664779346983No Hit
GTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTA2779400.554067578462739No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2433560.48512509759076883No Hit
GGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTT2093200.41727504326048975No Hit
AAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGG1781830.35520408481408294No Hit
GCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTCTT1492310.2974888781808052No Hit
AAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGGC1408370.2807556146936633No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1312430.26163017629770907No Hit
CTCTTTTTACCAGCTCCGAGGTGATTTTCATATTGAATTGCAAATTCGAA1165540.23234796193475596No Hit
GTTAGGCCTCTTTTTACCAGCTCCGAGGTGATTTTCATATTGAATTGCAA1013850.202108877608278No Hit
GGTTAGGCCTCTTTTTACCAGCTCCGAGGTGATTTTCATATTGAATTGCA890100.1774395738611513No Hit
GTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGAT642920.12816475769779956No Hit
GTGATTTTCATATTGAATTGCAAATTCGAAGAAGCAGCTTCAATCCTGCC607630.12112976998680078No Hit
GAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCA601890.11998551298875224No Hit
TGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTC587580.11713284440999358No Hit
GGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAG552450.11012975236444561No Hit
TGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGA507360.10114115514458345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)