FastQCFastQC Report
Wed 22 Feb 2023
EGAF00007906230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007906230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50163556
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA6345141.2648903917417658No Hit
CGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGAC4805000.9578667030702528No Hit
TGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTA4537270.9044952873755601No Hit
CAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAG2615990.5214921366419877No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT1608440.3206391508608361No Hit
CCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAG1452820.2896166292517221No Hit
CTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGACTTAAACCCACAAA1252600.24970319089818913No Hit
GGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTA991340.1976215561751643No Hit
CTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAAT740760.1476689571209824No Hit
GCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGACT593240.11826115357531672No Hit
CTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTT504950.10066072668373031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)