FastQCFastQC Report
Sun 9 Jul 2023
EGAF00007909949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007909949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42814085
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATG659820.15411283459637173No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC562680.1314240395421273No Hit
CGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCT521560.12181972357928471No Hit
TAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTA461320.10774958754811648No Hit
CAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCC452880.1057782736685836No Hit
ATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAG431030.10067481297334745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)