FastQCFastQC Report
Mon 22 May 2023
EGAF00007912945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007912945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37422021
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGT5039851.3467605076700695No Hit
CCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTA2438070.6515067692362206No Hit
CTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGC2055640.5493129299457129No Hit
CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATT2025170.5411706652615047No Hit
TTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTT1999640.5343484789343685No Hit
GCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTG1934880.5170431602291068No Hit
GTTGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACAT1256950.3358851196198089No Hit
GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTT1190700.31818163962870954No Hit
TGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGG979900.2618511704645775No Hit
TTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG895380.23926553833102707No Hit
CTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTC833990.2228607589098408No Hit
CTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTAT765150.2044651730594668No Hit
TTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTC725470.19386179062857134No Hit
TGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCT723920.1934475960023645No Hit
GGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGC703530.1879989325001982No Hit
GTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCAT661010.17663663862515605No Hit
GGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTG578990.15471906234032629No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG567810.15173151658484718No Hit
ATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGAACCTGGGAAACTCAT531090.1419191122788371No Hit
GATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCT513830.13730685469926918No Hit
TTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA475750.12713102801155501No Hit
GGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTG452340.12087535304413409No Hit
GCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGA439510.11744689042849932No Hit
TGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC432970.11569925632824588No Hit
GTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGA408680.10920842570207527No Hit
CGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGAACCTGGGA388490.10381320666780662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)