FastQCFastQC Report
Mon 22 May 2023
EGAF00007912947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007912947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37458548
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGT5079501.3560322733278396No Hit
CCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTA2450290.6541337373781814No Hit
CTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGC2056520.5490122041035868No Hit
CGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATT2020730.5394576426187155No Hit
TTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTT2005200.5353117264449225No Hit
GCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTG1932550.5159169543891557No Hit
GTTGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACAT1269430.33888927034758526No Hit
GTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTT1205690.3218731275969373No Hit
TGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGG980760.26182541832641243No Hit
TTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTG899630.24016681052346184No Hit
CTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTC839720.22417313132372352No Hit
CTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCTTATTAT773440.2064789056959709No Hit
TGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCT730230.19494348793231386No Hit
TTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTC724220.19333904773884988No Hit
GGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGC703210.18773018110579193No Hit
GTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCAT662920.1769742916890425No Hit
GGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTG583480.15576684926495282No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG567880.1516022457677751No Hit
ATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGAACCTGGGAAACTCAT525570.14030709359049368No Hit
GATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTGCCGTCATTGCT514760.13742123693635963No Hit
TTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA476960.1273300823085828No Hit
GGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGATTTTATTGCTG452430.12078151027103347No Hit
GCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGA438080.11695060897715523No Hit
TGATTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC436480.11652347015693187No Hit
GTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGA411660.10989747920821705No Hit
CGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCAGAACCTGGGA390250.10418182787010324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)