FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007913020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007913020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456445015
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTAAATTACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT18310600.4011567526923259No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG12165320.2665232306239559TruSeq Adapter, Index 1 (97% over 35bp)
CCGTAAATTACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA11821680.25899461296559456No Hit
CCGTAAATTACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4697890.10292345946641568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)