FastQCFastQC Report
Mon 22 May 2023
EGAF00007913033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007913033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495494973
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAACAAGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20325510.4102061798314147No Hit
TTAACAAGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13942000.28137520579850567No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC8095020.16337239409288618Illumina Single End PCR Primer 1 (96% over 31bp)
TTAACAAGTATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5823110.11752107119762847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)