FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007913046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007913046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474197121
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCCACTGATCTCGTATG29750730.6273916201190939TruSeq Adapter, Index 18 (97% over 36bp)
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT22375420.47185904361490205No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA14986340.3160360815433968No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6874480.1449709349880258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)