FastQCFastQC Report
Mon 22 May 2023
EGAF00007913047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007913047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474197121
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGCACCTGTGTAGATCTC26191380.5523310631824776Illumina Single End PCR Primer 1 (96% over 32bp)
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21756540.4588079310586957No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA17177720.36224850888540083No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5854780.12346721944775367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)