FastQCFastQC Report
Mon 22 May 2023
EGAF00007913048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007913048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466536594
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCCACTGATCTCGTATG28126290.6028742517033937TruSeq Adapter, Index 18 (97% over 36bp)
CAGCGCTGGTTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT20751550.4448000492754487No Hit
CAGCGCTGGTTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13746830.29465705749118576No Hit
CAGCGCTGGTTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6619100.14187740222581555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)