FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463658350
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT12801780.2761037302574191No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGCGGTTATCTCGTATG11819830.2549254208405823TruSeq Adapter, Index 23 (97% over 36bp)
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA7873190.16980584950103886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)