FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461596548
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTAATTGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT16208310.3511358581477087No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG15126390.32769720799558494TruSeq Adapter, Index 6 (97% over 35bp)
TCTTAATTGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA8664030.18769702757829115No Hit
TCTTAATTGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5355390.11601884856383285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)