FastQCFastQC Report
Sun 19 Mar 2023
EGAF00007914435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007914435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522780956
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGAGAGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19427050.3716097493038748No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTATCGCACGTGTAGATCTC15696000.3002404701214862Illumina Single End PCR Primer 1 (96% over 31bp)
CTCCCGAGAGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA15628180.29894317726447556No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC6932650.1326109897545694No Hit
CTCCCGAGAGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC6587460.12600803308527558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)